Data Science & AI Research Skills
794 data science, AI research, and analysis skills for coding agents. Data pipeline, ML model dev, statistical analysis - pre-verified and MCP-ready.
Molfeat - Molecular Featurization Hub
Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.
by K-Dense-AI/scientific-agent-skills / scientific-skills/molfeat
MongoDB DBA Chat Mode Instructions
Instructions for customizing GitHub Copilot behavior for MONGODB DBA chat mode.
by github/awesome-copilot / instructions/mongo-dba.instructions.md
Mongodb Performance Advisor
Analyze MongoDB database performance, offer query and index optimization insights and provide actionable recommendations to improve overall usage of the database.
by github/awesome-copilot / agents/mongodb-performance-advisor.agent.md
Monitor Experiment
Monitor running experiments, check progress, collect results. Use when user says "check results", "is it done", "monitor", or wants experiment output.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex/monitor-experiment
Monitor Experiment
Monitor running experiments, check progress, collect results. Use when user says "check results", "is it done", "monitor", or wants experiment output.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/monitor-experiment
Mssql
Execute read-only SQL queries against multiple Microsoft SQL Server databases. Use when: (1) querying MSSQL/SQL Server databases, (2) exploring database schemas/tables, (3) running SELECT queries for data analysis, (4) checking database contents. Supports multiple database connections with descriptions for intelligent auto-selection. Blocks all write operations (INSERT, UPDATE, DELETE, DROP, etc.) for safety.
by sanjay3290/ai-skills / skills/mssql
MS-SQL DBA Chat Mode Instructions
Instructions for customizing GitHub Copilot behavior for MS-SQL DBA chat mode.
by github/awesome-copilot / instructions/ms-sql-dba.instructions.md
Mysql
Execute read-only SQL queries against multiple MySQL databases. Use when: (1) querying MySQL databases, (2) exploring database schemas/tables, (3) running SELECT queries for data analysis, (4) checking database contents. Supports multiple database connections with descriptions for intelligent auto-selection. Blocks all write operations (INSERT, UPDATE, DELETE, DROP, etc.) for safety.
by sanjay3290/ai-skills / skills/mysql
Nano Banana - AI Image Generation
Generate and edit images using Google Gemini 3 Pro Image (Nano Banana Pro). Supports text-to-image, image editing, various aspect ratios, and high-resolution output (2K/4K). Use when user wants to generate images, create images, use Gemini image generation, or do AI image generation.
by ReScienceLab/opc-skills / skills/nanobanana
nanoGPT - Minimalist GPT Training
Educational GPT implementation in ~300 lines. Reproduces GPT-2 (124M) on OpenWebText. Clean, hackable code for learning transformers. By Andrej Karpathy. Perfect for understanding GPT architecture from scratch. Train on Shakespeare (CPU) or OpenWebText (multi-GPU).
by Orchestra-Research/AI-Research-SKILLs / 01-model-architecture/nanogpt
Nasa Earthdata
Access atmospheric properties and aerospace fluid data from NASA Earthdata
by Soljourner/claude-engineering-skills / skills/databases/nasa-earthdata
Native MCP Client
MCP client: connect servers, register tools (stdio/HTTP).
by NousResearch/hermes-agent / skills/mcp/native-mcp
Nemo Curator
GPU-accelerated data curation for LLM training. Supports text/image/video/audio. Features fuzzy deduplication (16× faster), quality filtering (30+ heuristics), semantic deduplication, PII redaction, NSFW detection. Scales across GPUs with RAPIDS. Use for preparing high-quality training datasets, cleaning web data, or deduplicating large corpora.
by NousResearch/hermes-agent / optional-skills/mlops/nemo-curator
Nemo Evaluator SDK
Evaluates LLMs across 100+ benchmarks from 18+ harnesses (MMLU, HumanEval, GSM8K, safety, VLM) with multi-backend execution. Use when needing scalable evaluation on local Docker, Slurm HPC, or cloud platforms. NVIDIA's enterprise-grade platform with container-first architecture for reproducible benchmarking.
by Orchestra-Research/AI-Research-SKILLs / 11-evaluation/nemo-evaluator
Networkx
Create, analyze, and visualize complex networks and graphs in Python with NetworkX. Use when working with network/graph data structures, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks (random, scale-free, small-world), reading/writing graph file formats, or drawing network topologies. Common applications include social, biological, transportation, and citation networks.
by K-Dense-AI/scientific-agent-skills / skills/networkx
Networkx
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.
by foryourhealth111-pixel/Vibe-Skills / bundled/skills/networkx
Neuropixels Analysis
Analyze Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion correction, Kilosort4 (and CPU) spike sorting, quality metrics, and unit curation (threshold-based, model-based UnitRefine, and AI-assisted visual review). Use when working with Neuropixels 1.0/2.0 recordings, spike sorting, or extracellular electrophysiology analysis.
by K-Dense-AI/scientific-agent-skills / skills/neuropixels-analysis
Neuropixels Data Analysis
Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular electrophysiology, or when the user mentions Neuropixels, SpikeGLX, Open Ephys, Kilosort, quality metrics, or unit curation.
by K-Dense-AI/scientific-agent-skills / scientific-skills/neuropixels-analysis
New Album Skill
Creates a new album with the correct directory structure and templates. Use IMMEDIATELY when the user says 'make a new album' or similar, before any discussion.
by bitwize-music-studio/claude-ai-music-skills / skills/new-album
News Monitor Skill
Set up news monitoring strategies, analyze news coverage, and synthesize current events. Create news digests and media analysis reports.
by claude-office-skills/skills / news-monitor
Nist Refprop
Query high-accuracy thermodynamic properties from NIST REFPROP database (commercial)
by Soljourner/claude-engineering-skills / skills/databases/nist-refprop
Nnsight Remote Interpretability
Provides guidance for interpreting and manipulating neural network internals using nnsight with optional NDIF remote execution. Use when needing to run interpretability experiments on massive models (70B+) without local GPU resources, or when working with any PyTorch architecture.
by Orchestra-Research/AI-Research-SKILLs / 04-mechanistic-interpretability/nnsight
Notebooklm
Programmatic access to Google NotebookLM via the notebooklm-py CLI and Python API. Use this skill whenever the user wants to create notebooks, add sources (URLs, YouTube, PDFs, files), generate audio overviews/podcasts, videos, slide decks, quizzes, flashcards, infographics, reports, mind maps, or data tables from their research materials. Also use when the user mentions NotebookLM, wants to turn documents into podcasts, generate study materials, or automate any NotebookLM workflow — even if they don't explicitly say "NotebookLM". Triggers on: podcast from documents, audio overview, NotebookLM, notebook research, generate quiz from PDF, flashcards from notes, study materials, deep dive audio.
by julianobarbosa/claude-code-skills / skills/notebooklm
Notebooklm
Query and manage Google NotebookLM notebooks with persistent profile auth, source sync, batch/multi queries, and structured exports. Use when user asks to query NotebookLM, 'ask my notebook', shares NotebookLM notebook URLs, wants to list/create notebooks, manage sources, do bulk folder sync, dedupe, or audit exports.
by sanjay3290/ai-skills / skills/notebooklm
Notebooklm
Complete API for Google NotebookLM - full programmatic access including features not in the web UI. Create notebooks, add sources, generate all artifact types, download in multiple formats. Activates on explicit /notebooklm or intent like "create a podcast about X"
by teng-lin/notebooklm-py
Notebooklm Research
Full-autopilot AI research agent powered by Google NotebookLM (notebooklm-py v0.3.4). Ingests sources (URL, text, PDF, DOCX, YouTube, Google Drive), runs deep web research, asks cited questions, and generates 10 native artifact types (audio podcast, video, cinematic video, slide deck, report, quiz, flashcards, mind map, infographic, data table, study guide). Produces original content drafts via Claude, with optional publishing to social platforms via threads-viral-agent integration. Use this skill when the user mentions: NotebookLM, research with sources, create notebook, generate podcast from articles, turn research into content, trending topic research, research pipeline, source-based analysis, cited research answers, generate slides, generate quiz, make flashcards, deep web research, create infographic, compare sources, research report, study guide, source analysis, or knowledge synthesis.
by claude-world/notebooklm-skill
Notion Research Documentation
Searches across your Notion workspace, synthesizes findings from multiple pages, and creates comprehensive research documentation saved as new Notion pages. Turns scattered information into structured reports with proper citations and actionable insights.
by makenotion/notion-cookbook / skills/claude/research-documentation
Novelty Check
Verify research idea novelty against recent literature. Use when user says "查新", "novelty check", "有没有人做过", "check novelty", or wants to verify a research idea is novel before implementing.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex-claude-review/novelty-check
Novelty Check
Verify research idea novelty against recent literature. Use when user says "查新", "novelty check", "有没有人做过", "check novelty", or wants to verify a research idea is novel before implementing.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex-gemini-review/novelty-check
Novelty Check
Verify research idea novelty against recent literature. Use when user says "查新", "novelty check", "有没有人做过", "check novelty", or wants to verify a research idea is novel before implementing.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/novelty-check
Novelty Check Skill
Verify research idea novelty against recent literature. Use when user says "\u67e5\u65b0", "novelty check", "\u6709\u6ca1\u6709\u4eba\u505a\u8fc7", "check novelty", or wants to verify a research idea is novel before implementing.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex/novelty-check
Nowait Reasoning Optimizer
Implements the NOWAIT technique for efficient reasoning in R1-style LLMs. Use when optimizing inference of reasoning models (QwQ, DeepSeek-R1, Phi4-Reasoning, Qwen3, Kimi-VL, QvQ), reducing chain-of-thought token usage by 27-51% while preserving accuracy. Triggers on "optimize reasoning", "reduce thinking tokens", "efficient inference", "suppress reflection tokens", or when working with verbose CoT outputs.
by foryourhealth111-pixel/Vibe-Skills / bundled/skills/nowait-reasoning-optimizer
Obliteratus
OBLITERATUS: abliterate LLM refusals (diff-in-means).
by NousResearch/hermes-agent / optional-skills/mlops/obliteratus
OBLITERATUS Skill
OBLITERATUS: abliterate LLM refusals (diff-in-means).
by NousResearch/hermes-agent / skills/mlops/inference/obliteratus
Observability LLM Obs
Monitor LLMs and agentic apps: performance, token/cost, response quality, and workflow orchestration. Use when the user asks about LLM monitoring, GenAI observability, or AI cost/quality.
by elastic/agent-skills / skills/observability/llm-obs
Omero Integration
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
by K-Dense-AI/scientific-agent-skills / skills/omero-integration
OMERO Integration
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
by K-Dense-AI/scientific-agent-skills / scientific-skills/omero-integration
Ontology Explorer
Parse, navigate, and query materials science ontology structures — browse class hierarchies, inspect individual classes and their properties, look up object and data property definitions with domain/range, search for ontology terms by keyword, and parse or summarize raw OWL/XML files. Supports the OCDO ecosystem (CMSO, ASMO, CDCO, PODO, PLDO, LDO). Use when exploring what classes or properties an ontology provides, finding the right CMSO term for a crystal structure or simulation concept, understanding parent-child class relationships, or onboarding to an unfamiliar materials ontology, even if the user only says "what ontology terms describe my FCC copper simulation" or "show me the CMSO class hierarchy."
by HeshamFS/materials-simulation-skills / skills/ontology/ontology-explorer
Ontology Mapper
Map materials science terms, crystal structures, and sample descriptions to standardized ontology classes and properties — resolve natural-language concepts to ontology entries with confidence scores, translate Bravais lattice types, space groups, and lattice constants into ontology-compliant annotations, and produce full sample metadata from structured descriptions. Supports any ontology in ontology_registry.json (CMSO, ASMO, etc.). Use when annotating simulation inputs with FAIR metadata, translating "BCC iron" or "FCC copper" into formal ontology terms, preparing machine- readable sample descriptions, or bridging between lab vocabulary and ontology vocabulary, even if the user only says "what CMSO terms describe my material" or "annotate this sample for me."
by HeshamFS/materials-simulation-skills / skills/ontology/ontology-mapper
openai-knowledge (Compatibility Alias)
Compatibility alias for OpenAI platform documentation guidance. Delegate to the canonical local `openai-docs` payload while preserving route compatibility.
by foryourhealth111-pixel/Vibe-Skills / bundled/skills/openai-knowledge
Openalex
Search academic papers via OpenAlex API for open citation data, institutional affiliations, and funding information. Use when user says "openalex search", "search openalex", "open citation graph", or wants comprehensive academic metadata beyond arXiv/Semantic Scholar.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/openalex
Openalex Database
Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publications, or conducting bibliometric analysis across 240M+ scholarly works. Use for literature searches, research output analysis, citation analysis, and academic database queries.
by foryourhealth111-pixel/Vibe-Skills / bundled/skills/openalex-database
Opencli Reader
Generic read-only fallback for any source opencli covers but this repo has no dedicated reader for — Yahoo Finance, Bloomberg, Reuters, Barchart, Eastmoney, Xueqiu, Sinafinance, Reddit, HackerNews, Substack, Medium, Weibo, Bilibili, Xiaohongshu, Zhihu, arXiv, Google Scholar, Apple Podcasts, Xiaoyuzhou, Spotify, YouTube, Weixin, Amazon, and more. Triggers: "use opencli to read", "grab the frontpage from hackernews", "read reddit r/wallstreetbets", "fetch Eastmoney hot stocks", "pull Xueqiu feed", "get Bloomberg markets headlines", "search arXiv for", any request to read from a site where a specialized skill does not exist but opencli does. FALLBACK — prefer twitter-reader, linkedin-reader, discord-reader, telegram-reader, or yc-reader when the source matches. READ-ONLY — never invoke write operations.
by himself65/finance-skills / plugins/social-readers/skills/opencli-reader
Open Notebook
Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when organizing research materials into notebooks, ingesting diverse content sources (PDFs, videos, audio, web pages, Office documents), generating AI-powered notes and summaries, creating multi-speaker podcasts from research, chatting with documents using context-aware AI, searching across materials with full-text and vector search, or running custom content transformations. Supports 16+ AI providers including OpenAI, Anthropic, Google, Ollama, Groq, and Mistral with complete data privacy through self-hosting.
by K-Dense-AI/scientific-agent-skills / scientific-skills/open-notebook
Openrlhf Training
High-performance RLHF framework with Ray+vLLM acceleration. Use for PPO, GRPO, RLOO, DPO training of large models (7B-70B+). Built on Ray, vLLM, ZeRO-3. 2× faster than DeepSpeedChat with distributed architecture and GPU resource sharing.
by Orchestra-Research/AI-Research-SKILLs / 06-post-training/openrlhf
Opentrons Integration
Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol API v2 features. Best for production Opentrons protocols, official API compatibility. For multi-vendor automation or broader equipment control use pylabrobot.
by K-Dense-AI/scientific-agent-skills / scientific-skills/opentrons-integration
Optimizing Attention Flash
Optimizes transformer attention with Flash Attention for 2-4x speedup and 10-20x memory reduction. Use when training/running transformers with long sequences (>512 tokens), encountering GPU memory issues with attention, or need faster inference. Supports PyTorch native SDPA, flash-attn library, H100 FP8, and sliding window attention.
by NousResearch/hermes-agent / optional-skills/mlops/flash-attention
Optimizing Attention Flash
Optimizes transformer attention with Flash Attention for 2-4x speedup and 10-20x memory reduction. Use when training/running transformers with long sequences (>512 tokens), encountering GPU memory issues with attention, or need faster inference. Supports PyTorch native SDPA, flash-attn library, H100 FP8, and sliding window attention.
by Orchestra-Research/AI-Research-SKILLs / 10-optimization/flash-attention
Oracle
Designing and evaluating AI/ML systems across prompt engineering, RAG design, LLM application patterns, AI safety, evaluation frameworks, MLOps, and cost optimization. Use when designing AI/ML pipelines, RAG architectures, prompt strategies, evaluation harnesses, or LLM cost models.
by simota/agent-skills / oracle
Outlines
Outlines linked from Hermes creative, research, and development skills, with the upstream skill instructions available on GitHub.
by NousResearch/hermes-agent / skills/mlops/inference/outlines
Outlines
Outlines: structured JSON/regex/Pydantic LLM generation.
by NousResearch/hermes-agent / optional-skills/mlops/inference/outlines
Outlines: Structured Text Generation
Guarantee valid JSON/XML/code structure during generation, use Pydantic models for type-safe outputs, support local models (Transformers, vLLM), and maximize inference speed with Outlines - dottxt.ai's structured generation library
by Orchestra-Research/AI-Research-SKILLs / 16-prompt-engineering/outlines
Pandas Pro
Performs pandas DataFrame operations for data analysis, manipulation, and transformation. Use when working with pandas DataFrames, data cleaning, aggregation, merging, or time series analysis. Invoke for data manipulation tasks such as joining DataFrames on multiple keys, pivoting tables, resampling time series, handling NaN values with interpolation or forward-fill, groupby aggregations, type conversion, or performance optimization of large datasets.
by Jeffallan/claude-skills / skills/pandas-pro
Paper Claim Audit
Zero-context verification that every number, comparison, and scope claim in the paper matches raw result files. Uses a fresh cross-model reviewer with NO prior context to prevent confirmation bias. Use when user says "审查论文数据", "check paper claims", "verify numbers", "论文数字核对", or before submission to ensure paper-to-evidence fidelity.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex/paper-claim-audit
Paper Claim Audit
Zero-context verification that every number, comparison, and scope claim in the paper matches raw result files. Uses a fresh cross-model reviewer with NO prior context to prevent confirmation bias. Use when user says "审查论文数据", "check paper claims", "verify numbers", "论文数字核对", or before submission to ensure paper-to-evidence fidelity.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/paper-claim-audit
Paper Compile
Compile LaTeX paper to PDF, fix errors, and verify output. Use when user says "编译论文", "compile paper", "build PDF", "生成PDF", or wants to compile LaTeX into a submission-ready PDF.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/paper-compile
Paper Figure
Generate publication-quality figures and tables from experiment results. Use when user says "画图", "作图", "generate figures", "paper figures", or needs plots for a paper.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex-gemini-review/paper-figure
Paper Figure
Generate publication-quality figures and tables from experiment results. Use when user says "画图", "作图", "generate figures", "paper figures", or needs plots for a paper.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex-claude-review/paper-figure
Paper Figure
Generate publication-quality figures and tables from experiment results. Use when user says \"画图\", \"作图\", \"generate figures\", \"paper figures\", or needs plots for a paper.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex/paper-figure
Paper Figure
Generate publication-quality figures and tables from experiment results. Use when user says "画图", "作图", "generate figures", "paper figures", or needs plots for a paper.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/paper-figure
Paper Illustration
Generate publication-quality AI illustrations for academic papers using Gemini image generation. Creates architecture diagrams, method illustrations with Claude-supervised iterative refinement loop. Use when user says "生成图表", "画架构图", "AI绘图", "paper illustration", "generate diagram", or needs visual figures for papers.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/paper-illustration
Paper Illustration Image2
Generate publication-quality academic illustrations through a local Codex app-server bridge that uses Codex native image generation. This is a separate experimental alternative to `paper-illustration`, intended for Claude Code users who want a GPT-image-style renderer without modifying the original skill.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/paper-illustration-image2
Paper Illustration: Multi-Stage Codex-Supervised Figure Generation
Generate publication-quality AI illustrations for academic papers using Gemini image generation. Creates architecture diagrams, method illustrations with Codex-supervised iterative refinement loop. Use when user says "生成图表", "画架构图", "AI绘图", "paper illustration", "generate diagram", or needs visual figures for papers.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex/paper-illustration
Paper Lookup
Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles. Covers PubMed, PMC (full text), bioRxiv, medRxiv, arXiv, OpenAlex, Crossref, Semantic Scholar, CORE, Unpaywall. Use when searching for papers, citations, DOI/PMID lookups, abstracts, full text, open access, preprints, citation graphs, author search, or any scholarly literature query. Triggers on mentions of any supported database or requests like "find papers on X" or "look up this DOI".
by K-Dense-AI/scientific-agent-skills / scientific-skills/paper-lookup
Paper Lookup
Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles. Covers PubMed, PMC (full text), bioRxiv, medRxiv, arXiv, OpenAlex, Crossref, Semantic Scholar, CORE, Unpaywall. Use when searching for papers, citations, DOI/PMID lookups, abstracts, full text, open access, preprints, citation graphs, author search, or any scholarly literature query. Triggers on mentions of any supported database or requests like "find papers on X" or "look up this DOI".
by K-Dense-AI/scientific-agent-skills / skills/paper-lookup
Paper Plan
Generate a structured paper outline from review conclusions and experiment results. Use when user says \"写大纲\", \"paper outline\", \"plan the paper\", \"论文规划\", or wants to create a paper plan before writing.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex/paper-plan
Paper Plan
Generate a structured paper outline from review conclusions and experiment results. Use when user says "写大纲", "paper outline", "plan the paper", "论文规划", or wants to create a paper plan before writing.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex-claude-review/paper-plan
Paper Plan
Generate a structured paper outline from review conclusions and experiment results. Use when user says "写大纲", "paper outline", "plan the paper", "论文规划", or wants to create a paper plan before writing.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex-gemini-review/paper-plan
Paper Poster: From Paper to Conference Poster
Generate a conference poster (article + tcbposter LaTeX → A0/A1 PDF + editable PPTX + SVG) from a compiled paper. Use when user says "做海报", "制作海报", "conference poster", "make poster", "生成poster", "poster session", or wants to create a poster for a conference presentation.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex/paper-poster
Paper Poster: From Paper to Conference Poster
Generate a conference poster (article + tcbposter LaTeX → A0/A1 PDF + editable PPTX + SVG) from a compiled paper. Use when user says "做海报", "制作海报", "conference poster", "make poster", "生成poster", "poster session", or wants to create a poster for a conference presentation.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/paper-poster
Paper Write
Draft LaTeX paper section by section from an outline. Use when user says "写论文", "write paper", "draft LaTeX", "开始写", or wants to generate LaTeX content from a paper plan.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex-gemini-review/paper-write
Paper Write
Draft LaTeX paper section by section from an outline. Use when user says "写论文", "write paper", "draft LaTeX", "开始写", or wants to generate LaTeX content from a paper plan.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/skills-codex-claude-review/paper-write
Paperzilla
Chat with your agent about projects, recommendations, and canonical papers in Paperzilla. Use when users ask for recent project recommendations, canonical paper details, markdown-based summaries, recommendation feedback, feed export, or Atom feed URLs.
by K-Dense-AI/scientific-agent-skills / scientific-skills/paperzilla
Parallel CLI
Optional vendor skill for Parallel CLI — agent-native web search, extraction, deep research, enrichment, FindAll, and monitoring. Prefer JSON output and non-interactive flows.
by NousResearch/hermes-agent / optional-skills/research/parallel-cli
Parallel Web Toolkit
All-in-one web toolkit powered by parallel-cli, with a strong emphasis on academic and scientific sources. Use this skill whenever the user needs to search the web, fetch/extract URL content, enrich data with web-sourced fields, or run deep research reports. Covers: web search (fast lookups, research, current info — prioritizing peer-reviewed papers, preprints, and scholarly databases), URL extraction (fetching pages, articles, academic PDFs), bulk data enrichment (adding fields to CSV/lists from the web), and deep research (exhaustive multi-source reports grounded in academic literature). Also handles setup, status checks, and result retrieval. Use this skill for ANY web-related task — even if the user doesn't mention 'parallel' or 'web' explicitly. If they want to look something up, fetch a page, enrich a dataset, investigate a topic, find academic papers, check citations, or review scientific literature, this is the skill to use.
by K-Dense-AI/scientific-agent-skills / scientific-skills/parallel-web
Patent Review
Get an external patent examiner review of a patent application. Use when user says "专利审查", "patent review", "审查意见", "examiner review", or wants critical feedback on patent claims and specification.
by wanshuiyin/Auto-claude-code-research-in-sleep / skills/patent-review
Pathml
Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this skill when working with histopathology slides, H&E stained images, multiplex immunofluorescence (CODEX, Vectra), spatial proteomics, nucleus detection/segmentation, tissue graph construction, or training ML models on pathology data. Supports 160+ slide formats including Aperio SVS, NDPI, DICOM, OME-TIFF for digital pathology workflows.
by foryourhealth111-pixel/Vibe-Skills / bundled/skills/pathml
PathML
Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide formats. For simple tile extraction from H&E slides, histolab may be simpler.
by K-Dense-AI/scientific-agent-skills / scientific-skills/pathml
Peft Fine Tuning
Parameter-efficient fine-tuning for LLMs using LoRA, QLoRA, and 25+ methods. Use when fine-tuning large models (7B-70B) with limited GPU memory, when you need to train <1% of parameters with minimal accuracy loss, or for multi-adapter serving. HuggingFace's official library integrated with transformers ecosystem.
by NousResearch/hermes-agent / optional-skills/mlops/peft
PennyLane
Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational algorithms (VQE, QAOA), quantum neural networks, and integration with PyTorch/JAX/TensorFlow. For hardware-specific optimizations use qiskit (IBM) or cirq (Google); for open quantum systems use qutip.
by K-Dense-AI/scientific-agent-skills / scientific-skills/pennylane
Performing Causal Analysis
Estimate causal effects from existing data. Use when fitting or interpreting DiD, ITS, synthetic control, regression discontinuity, or other treatment-effect analyses, including robustness checks and counterfactual plots. For choosing a study design before analysis, use designing-experiments instead.
by foryourhealth111-pixel/Vibe-Skills / bundled/skills/performing-causal-analysis
Perplexity Search
Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting grounded answers with source citations, or accessing information beyond the model knowledge cutoff. Provides access to multiple Perplexity models including Sonar Pro, Sonar Pro Search (advanced agentic search), and Sonar Reasoning Pro through a single OpenRouter API key.
by foryourhealth111-pixel/Vibe-Skills / bundled/skills/perplexity-search
Phoenix CLI
Debug LLM applications using the Phoenix CLI. Fetch traces, analyze errors, structure trace review with open coding and axial coding, inspect datasets, review experiments, query annotation configs, and use the GraphQL API. Use whenever the user is analyzing traces or spans, investigating LLM/agent failures, deciding what to do after instrumenting an app, building failure taxonomies, choosing what evals to write, or asking "what's going wrong", "what kinds of mistakes", or "where do I focus" — even without naming a technique.
by github/awesome-copilot / skills/phoenix-cli
Phoenix Evals
Build and run evaluators for AI/LLM applications using Phoenix.
by github/awesome-copilot / skills/phoenix-evals
Phoenix Observability
Open-source AI observability platform for LLM tracing, evaluation, and monitoring. Use when debugging LLM applications with detailed traces, running evaluations on datasets, or monitoring production AI systems with real-time insights.
by Orchestra-Research/AI-Research-SKILLs / 17-observability/phoenix
Phoenix Tracing
OpenInference semantic conventions and instrumentation for Phoenix AI observability. Use when implementing LLM tracing, creating custom spans, or deploying to production.
by github/awesome-copilot / skills/phoenix-tracing
Phylogenetics
Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.
by K-Dense-AI/scientific-agent-skills / scientific-skills/phylogenetics
Pinecone
Managed vector database for production AI applications. Fully managed, auto-scaling, with hybrid search (dense + sparse), metadata filtering, and namespaces. Low latency (<100ms p95). Use for production RAG, recommendation systems, or semantic search at scale. Best for serverless, managed infrastructure.
by NousResearch/hermes-agent / optional-skills/mlops/pinecone
Plotly
Interactive scientific and statistical data visualization library for Python. Use when creating charts, plots, or visualizations including scatter plots, line charts, bar charts, heatmaps, 3D plots, geographic maps, statistical distributions, financial charts, and dashboards. Supports both quick visualizations (Plotly Express) and fine-grained customization (graph objects). Outputs interactive HTML or static images (PNG, PDF, SVG).
by foryourhealth111-pixel/Vibe-Skills / bundled/skills/plotly
Plugin Configuration Skill
Sets up or edits the plugin configuration file interactively. Use on first-time setup, when config is missing, or when the user wants to change settings.
by bitwize-music-studio/claude-ai-music-skills / skills/configure
Plugin Test Suite
Runs automated tests to validate plugin integrity across 14 categories. Use before creating PRs, after making changes to skills or templates, or to verify plugin health.
by bitwize-music-studio/claude-ai-music-skills / skills/test
Polars
Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory. Lazy evaluation, parallel execution, Apache Arrow backend. Best for 1-100GB datasets, ETL pipelines, faster pandas replacement. For larger-than-RAM data use dask or vaex.
by foryourhealth111-pixel/Vibe-Skills / bundled/skills/polars
polars-bio
High-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merge, coverage, complement, subtract for BED/VCF/BAM/GFF intervals. Streaming, cloud-native, faster bioframe alternative.
by K-Dense-AI/scientific-agent-skills / scientific-skills/polars-bio
Postgres
Execute read-only SQL queries against multiple PostgreSQL databases. Use when: (1) querying PostgreSQL databases, (2) exploring database schemas/tables, (3) running SELECT queries for data analysis, (4) checking database contents. Supports multiple database connections with descriptions for intelligent auto-selection. Blocks all write operations (INSERT, UPDATE, DELETE, DROP, etc.) for safety.
by sanjay3290/ai-skills / skills/postgres
PostgreSQL Database Administrator
Work with PostgreSQL databases using the PostgreSQL extension.
by github/awesome-copilot / agents/postgresql-dba.agent.md
Posthog Analytics
PostHog analytics, event tracking, feature flags, dashboards
by alinaqi/maggy / skills/posthog-analytics
Power BI Custom Visuals Development Best Practices
Comprehensive Power BI custom visuals development guide covering React, D3.js integration, TypeScript patterns, testing frameworks, and advanced visualization techniques.
by github/awesome-copilot / instructions/power-bi-custom-visuals-development.instructions.md
Power BI Data Modeling Best Practices
Comprehensive Power BI data modeling best practices based on Microsoft guidance for creating efficient, scalable, and maintainable semantic models using star schema principles.
by github/awesome-copilot / instructions/power-bi-data-modeling-best-practices.instructions.md
Power BI Data Modeling Expert Mode
Expert Power BI data modeling guidance using star schema principles, relationship design, and Microsoft best practices for optimal model performance and usability.
by github/awesome-copilot / agents/power-bi-data-modeling-expert.agent.md
Power BI DAX Best Practices
Comprehensive Power BI DAX best practices and patterns based on Microsoft guidance for creating efficient, maintainable, and performant DAX formulas.
by github/awesome-copilot / instructions/power-bi-dax-best-practices.instructions.md